Biostatistics

Biostatistics / Bioinformatics

Bioinformatics unit assists other CCP units with computational, statistical, and analytical analyses and provides these services to CCP external users as well. The unit focuses, principally, on data analysis, biostatistics, tools for automatic repeated analysis, application development and occasional organization of training workshops in biostatistics and programming. We endeavor towards the automation of various interdisciplinary enterprises leveraging such novel approaches as deep learning. More info
Head of Unit: Vendula Novosadová, Ph.D.
Research assistants:
Technician:
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The unit provides integrative bioinformatics support for phenotyping research, with a particular focus on large-scale analyses of metabolomics and image-derived data. It delivers comprehensive services covering data processing, statistical analysis, and the development of automated workflows for high-throughput and reproducible analyses.

Responsibility for the complete phenotyping data workflow and data governance is assumed, including data acquisition, quality control, standardization, storage, integration, and dissemination. Data are curated and prepared for publication in public repositories and web platforms, ensuring compliance with community standards and FAIR principles.

The head of the unit serves as the Data Manager, overseeing data stewardship, metadata standardization, documentation, and regulatory compliance. All activities are conducted in accordance with a formal Data Management Plan (DMP), which defines procedures for data handling, storage, security, and sharing.


Data Management and Workflow at CCP
CCP´s Data Management Plan Download

Custom services Computational, Statistical, and Analytical Analyses

  • Statistical and graphical analysis
  • Experimental design
  • Data quality control
  • NGS and ChipSeq data analysis
  • Single cells data analysis
  • qPCR data analysis
  • Big data analysis
  • Metabolomics data analysis
  • Ontology search and biclustering data
  • Maldi data analysis
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Biostatistics / Bioinformatics unit was established with the support from OP RDE project CZ.02.1.01/0.0/0.0/16_013/0001789 – Upgrade of the Czech Centre for Phenogenomics: developing towards translation research. ITC infrastructure was expanded with the support from the project CZ.02.1.01/0.0/0.0/18_046/0015861 CCP Infrastructure Upgrade II.